As pointed out by Jeff, the notion you define may not really be what you are after, since indecomposable continua are not 'indecomposable' in your sense. However, we can ask:
Is there a nontrivial connected metric space $X$ such that $X$ cannot be written as the union of two proper connected subsets?
The answer, as Jeff suggested, is no.
Indeed, let $X$ be a nontrivial connected metric space. If $X$ does not have any cut-points, then clearly we can write
$$X = (xsetminus{x_0}) cup (Xsetminus{x_1})$$
for some $x_0neq x_1$, and are done.
If $X$ does have a cut-point $x_0$, let $A$ and $B$ be open subsets of $X$ such that
$$Acap B = {x_0}; quad Asetminus{x_0},Bsetminus{x_0}neqemptyset quadtext{and}quad Acup B = X.$$
We claim that $A$ and $B$ are connected. Indeed, if $Uni x_0$ is relatively open and closed in $A$, then $Ucup B$ is open and closed in $X$, so we must have $U=A$ (since $X$ is connected).
Regarding your question on the number of proper connected subsets, we can still ask the following question:
If $X$ is any nontrivial connected metric space, what can be said about the cardinality of the set $S$ of proper connected subsets of $X$?
It seems plausible that the set $S$ has at least the cardinality of the continuum, but I wasn't able to find a reference (and haven't thought very deeply about it). Certainly the set $S$ must be infinite.
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