My recollection is that when you turn these into analytic spaces you get something which is locally contractible topologically. In this case what you are describing is a principal bundle for locally contractible spaces in which the fiber is contractible. If the base is paracompact then this will indeed be a weak equivalence, in fact the space corresponding to X will be a topological product space $X = U times Y$.
This follows because you can build a global section (trivialization). How do you do this? You start with you local trivializations, and you choose a partition of unity subordinate to this cover. You also choose a contraction of U. You can then patch these together to obtain a global section. The exact method and formula is explained, for example, in the appendix of this paper. (This is probably not the only/first/best reference).
Segal, G. Cohomology of topological groups. 1970 Symposia Mathematica, Vol. IV (INDAM, Rome, 1968/69) pp. 377--387 Academic Press, London
So the real question is whether your space Y is paracompact. I'm pretty sure that your conditions (that Y is quasi-projective) ensure that this is the case.
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